STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hdac4Histone deacetylase 4. (1077 aa)    
Predicted Functional Partners:
Ncor2
Nuclear receptor co-repressor 2.
    
 0.988
Arid4a
AT-rich interaction domain 4A.
    
 0.984
Arid4b
AT-rich interaction domain 4B.
    
 0.984
Ywhag
Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma.
    
 
 0.961
Mef2c
Myocyte enhancer factor 2C.
   
 
 0.952
Nynrin
NYN domain and retroviral integrase containing.
    
 0.948
ENSPEMP00000016563
annotation not available
   
 0.946
Ankra2
Ankyrin repeat family A member 2.
   
 0.946
Ncor1
Nuclear receptor co-repressor 1.
    
 0.943
Phf12
PHD finger protein 12.
   
 0.940
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.