STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vrk1VRK serine/threonine kinase 1. (440 aa)    
Predicted Functional Partners:
Ltv1
LTV1 ribosome biogenesis factor.
    
 0.965
Bysl
Bystin.
    
 0.921
Riok2
RIO kinase 2.
    
 0.918
ENSPEMP00000002192
annotation not available
    
 0.894
Banf1
Barrier to autointegration factor 1.
    
 0.894
Tsr1
TSR1 ribosome maturation factor.
    
 0.880
Ankle2
Ankyrin repeat and LEM domain containing 2.
   
 0.872
Banf2
Barrier to autointegration factor 2.
    
 0.868
Nob1
NIN1/RPN12 binding protein 1 homolog.
    
 0.858
Cry2
Cryptochrome circadian regulator 2.
    
 0.841
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.