STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoxd10Homeobox D10. (340 aa)    
Predicted Functional Partners:
Hoxd9
Homeobox D9.
   
  
0.868
Hoxa10
Homeobox A10.
   
 
0.671
Pbx1
Pre B cell leukemia homeobox 1.
    
 
 0.639
Pbx4
Pre B cell leukemia homeobox 4.
    
 
 0.639
Pbx2
PBX homeobox 2.
    
 
 0.639
Pbx3
PBX homeobox 3.
    
 
 0.639
Hoxd13
Homeobox D13.
   
  
0.605
Hoxd3
Homeobox D3.
   
 
0.600
Col2a1
Collagen type II alpha 1 chain.
      
 0.568
Hoxc11
Homeobox C11.
   
  
0.567
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.