STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hmgcll13-hydroxymethyl-3-methylglutaryl-CoA lyase like 1. (343 aa)    
Predicted Functional Partners:
Bcat2
Branched chain amino acid transaminase 2.
  
 0.977
Bcat1
Branched chain amino acid transaminase 1.
  
 0.977
Idh3g
Isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma.
  
 0.974
Idh3a
Isocitrate dehydrogenase 3 (NAD+) alpha.
  
 0.974
Idh3b
Isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta.
  
 0.974
Mccc2
methylcrotonoyl-CoA carboxylase 2.
 
 0.954
Mccc1
methylcrotonoyl-Coenzyme A carboxylase 1 (alpha).
 
 
 0.942
Pcca
propionyl-CoA carboxylase subunit alpha.
 
 
 0.939
Nelfcd
Negative elongation factor complex member C/D.
  
 
 0.938
Pccb
Propionyl Coenzyme A carboxylase, beta polypeptide.
  
 0.934
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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