STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hesx1HESX homeobox 1. (185 aa)    
Predicted Functional Partners:
Ldb1
LIM domain binding 1.
    
 0.726
Ldb2
LIM domain binding 2.
    
 0.726
Lhx3
LIM homeobox 3.
    
0.687
Tcf3
Transcription factor 3.
    
 0.629
Srf
Serum response factor.
    
 0.620
Lhx4
LIM homeobox 4.
    
0.616
Tcf4
Transcription factor 4.
    
 0.612
Tcf12
Transcription factor 12.
    
 0.612
Pou1f1
POU class 1 homeobox 1.
    
 
 0.595
Zpbp
Zona pellucida binding protein.
      
 0.556
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.