STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zfp780bZinc finger protein 780B. (829 aa)    
Predicted Functional Partners:
Sufu
SUFU negative regulator of hedgehog signaling.
   
 0.604
Gtf3c3
General transcription factor IIIC, polypeptide 3.
    
 0.584
Lamtor2
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.
    
  0.574
Mrps11
Mitochondrial ribosomal protein S11.
    
  0.564
Chchd1
Coiled-coil-helix-coiled-coil-helix domain containing 1.
   
  0.562
Mrps10
Mitochondrial ribosomal protein S10.
   
  0.559
Mrps28
Mitochondrial ribosomal protein S28.
    
  0.554
Mrps9
Mitochondrial ribosomal protein S9.
    
  0.554
Mrps6
Mitochondrial ribosomal protein S6.
    
  0.554
Mysm1
Myb like, SWIRM and MPN domains 1.
   
 0.553
Your Current Organism:
Peromyscus maniculatus
NCBI taxonomy Id: 230844
Other names: P. maniculatus bairdii, Peromyscus maniculatus bairdii, prairie deer mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.