rps8e protein (Pyrodictium occultum) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

rps8e

30S ribosomal protein S8e; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)

Predicted Functional Partners:

rps9

0.999

rpl7ae

0.999

CF15_02375

0.999

rpl23

0.999

rpl24

0.999

rpl30

0.999

rpl10

0.998

rpl22

0.988

rpl3

0.986

rpl31e

0.982

Your Current Organism:

Pyrodictium occultum

NCBI taxonomy Id: 2309
Other names: DSM 2709, JCM 9393, NBRC 100438, P. occultum, strain PL-19

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CF15_02375	rpl10	CF15_02375	CF15_02250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetoin utilization protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.967
CF15_02375	rpl22	CF15_02375	CF15_06385	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.839
CF15_02375	rpl23	CF15_02375	CF15_06380	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family.	0.915
CF15_02375	rpl24	CF15_02375	CF15_06415	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit.	0.886
CF15_02375	rpl3	CF15_02375	CF15_06370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.925
CF15_02375	rpl30	CF15_02375	CF15_06465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
CF15_02375	rpl31e	CF15_02375	CF15_02295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribosomal protein L31e family.	0.907
CF15_02375	rpl7ae	CF15_02375	CF15_00740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L7; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.	0.821
CF15_02375	rps8e	CF15_02375	CF15_00260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S8e; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
CF15_02375	rps9	CF15_02375	CF15_00690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.	0.826
rpl10	CF15_02375	CF15_02250	CF15_02375	Acetoin utilization protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
rpl10	rpl22	CF15_02250	CF15_06385	Acetoin utilization protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
rpl10	rpl23	CF15_02250	CF15_06380	Acetoin utilization protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	50S ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family.	0.999
rpl10	rpl24	CF15_02250	CF15_06415	Acetoin utilization protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	50S ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit.	0.999
rpl10	rpl3	CF15_02250	CF15_06370	Acetoin utilization protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.999
rpl10	rpl30	CF15_02250	CF15_06465	Acetoin utilization protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
rpl10	rpl31e	CF15_02250	CF15_02295	Acetoin utilization protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribosomal protein L31e family.	0.999
rpl10	rpl7ae	CF15_02250	CF15_00740	Acetoin utilization protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	50S ribosomal protein L7; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.	0.999
rpl10	rps8e	CF15_02250	CF15_00260	Acetoin utilization protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	30S ribosomal protein S8e; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rpl10	rps9	CF15_02250	CF15_00690	Acetoin utilization protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.	0.999