STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF15_00960Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (892 aa)    
Predicted Functional Partners:
CF15_05235
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase 116 kDa subunit family.
    
 0.856
atpA
ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.
    
 0.845
CF15_05245
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.837
atpB
ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit.
   
 0.832
CF15_05270
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.830
CF15_05240
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.829
ppa
Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
   
 
 0.827
atpD
ATP synthase subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 0.821
CF15_08100
Membrane protease subunit, stomatin/prohibitin-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.640
rps2
30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family.
   
   0.600
Your Current Organism:
Pyrodictium occultum
NCBI taxonomy Id: 2309
Other names: DSM 2709, JCM 9393, NBRC 100438, P. occultum, strain PL-19
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