STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF15_01975Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)    
Predicted Functional Partners:
CF15_02430
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.952
CF15_04700
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.872
CF15_01965
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.855
hemL
Glutamate-1-semialdehyde aminotransferase; Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.835
CF15_01980
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.822
CF15_02435
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.818
CF15_04925
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.789
CF15_06760
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.783
CF15_01970
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
CF15_02345
Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.759
Your Current Organism:
Pyrodictium occultum
NCBI taxonomy Id: 2309
Other names: DSM 2709, JCM 9393, NBRC 100438, P. occultum, strain PL-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.