STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF15_02060Hydrogenase expression protein HypD; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)    
Predicted Functional Partners:
CF15_02050
Hydrogenase expression/formation protein HypE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.995
CF15_02055
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.992
CF15_02045
Hydrogenase maturation protein HypF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.933
CF15_03295
Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 
 0.802
CF15_02010
Hyaluronate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.786
CF15_05395
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.739
CF15_02025
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.571
hypA
Hypothetical protein; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
  
 0.548
CF15_05390
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.534
CF15_02065
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.512
Your Current Organism:
Pyrodictium occultum
NCBI taxonomy Id: 2309
Other names: DSM 2709, JCM 9393, NBRC 100438, P. occultum, strain PL-19
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