Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
CF15_03065Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)    
Predicted Functional Partners:
CF15_03070
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.994
CF15_03075
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.979
CF15_01445
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.950
CF15_04835
Tungstate/molybdate transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.897
CF15_07890
Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.708
CF15_07895
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.645
CF15_01205
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.609
CF15_03320
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
    0.605
CF15_01435
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.511
CF15_07900
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.511
Your Current Organism:
Pyrodictium occultum
NCBI taxonomy Id: 2309
Other names: DSM 2709, JCM 9393, NBRC 100438, P. occultum, strain PL-19
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