STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF15_03215DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)    
Predicted Functional Partners:
CF15_01790
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.642
CF15_03050
Cren protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.631
CF15_03220
Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.
       0.536
CF15_05150
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.534
CF15_01815
Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.498
CF15_07930
Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.473
CF15_07840
Endonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.461
CF15_01825
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.454
tbp
TATA-box-binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation (By similarity).
      
 0.454
CF15_04290
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.454
Your Current Organism:
Pyrodictium occultum
NCBI taxonomy Id: 2309
Other names: DSM 2709, JCM 9393, NBRC 100438, P. occultum, strain PL-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.