STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF15_03555HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)    
Predicted Functional Partners:
sat
Sulfate adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sulfate adenylyltransferase family.
     
 0.999
cysC
Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.
    
  0.999
tbp
TATA-box-binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation (By similarity).
   
 0.747
CF15_03560
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.724
CF15_06255
DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.503
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
  
    0.477
rpoH
DNA-directed RNA polymerase subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family.
   
 
  0.460
CF15_03545
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.447
CF15_01790
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.436
CF15_07570
Phosphomethylpyrimidine kinase; Catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.410
Your Current Organism:
Pyrodictium occultum
NCBI taxonomy Id: 2309
Other names: DSM 2709, JCM 9393, NBRC 100438, P. occultum, strain PL-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.