Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF15_04090D-glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (342 aa)    
Predicted Functional Partners:
CF15_01510
Glycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.972
CF15_04485
Hypothetical protein; Catalyzes the dephosphorylation of 2-phosphoglycolate.
  
 
 0.953
CF15_00075
Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.952
CF15_05490
Glycolate oxidase subunit GlcD; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.933
CF15_04095
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.752
CF15_04100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.752
CF15_00500
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.682
rpl4lp
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
  
 0.670
fni
Isopentenyl pyrophosphate isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 
 0.669
CF15_04340
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.660
Your Current Organism:
Pyrodictium occultum
NCBI taxonomy Id: 2309
Other names: DSM 2709, JCM 9393, NBRC 100438, P. occultum, strain PL-19
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