Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CF15_04450Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)    
Predicted Functional Partners:
CF15_01750
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.989
CF15_03465
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.937
CF15_01740
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.861
CF15_04455
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.776
CF15_04430
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.711
CF15_05795
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.689
CF15_04460
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.668
CF15_01565
Pyruvate ferredoxin oxidoreductase; Catalyzes the formation of acetyl-CoA from pyruvate and coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.573
CF15_04795
2-ketoisovalerate ferredoxin oxidoreductase; Catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.573
CF15_07525
2-oxoacid:ferredoxin oxidoreductase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.573
Your Current Organism:
Pyrodictium occultum
NCBI taxonomy Id: 2309
Other names: DSM 2709, JCM 9393, NBRC 100438, P. occultum, strain PL-19
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