STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbcLRibulose 1,5-bisphosphate carboxylase; Catalyzes the addition of molecular CO(2) and H(2)O to ribulose 1,5-bisphosphate (RuBP), generating two molecules of 3- phosphoglycerate (3-PGA). Functions in an archaeal AMP degradation pathway, together with AMP phosphorylase and R15P isomerase. Belongs to the RuBisCO large chain family. Type III subfamily. (438 aa)    
Predicted Functional Partners:
CF15_07795
Translation initiation factor IF-2B subunit delta; eIF-2BB; catalyzes the binding of GTP to IF2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eIF-2B alpha/beta/delta subunits family.
    
 0.971
pgk
Phosphoglycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phosphoglycerate kinase family.
    
 0.957
CF15_04485
Hypothetical protein; Catalyzes the dephosphorylation of 2-phosphoglycolate.
    
  0.946
CF15_07790
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eIF-2B alpha/beta/delta subunits family.
    
 0.917
CF15_05410
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.766
CF15_00610
Thymidine phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.705
CF15_03630
Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). Belongs to the EIF-2B alpha/beta/delta subunits family. MtnA subfamily.
  
 
 0.684
CF15_04520
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.578
CF15_00500
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.574
CF15_05530
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.515
Your Current Organism:
Pyrodictium occultum
NCBI taxonomy Id: 2309
Other names: DSM 2709, JCM 9393, NBRC 100438, P. occultum, strain PL-19
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