STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF15_05830Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (161 aa)    
Predicted Functional Partners:
CF15_05440
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.626
CF15_00915
50S ribosomal protein L40; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL40 family.
     
  0.525
CF15_05835
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.509
CF15_05820
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.500
CF15_05825
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.500
CF15_05840
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.453
CF15_05845
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.453
CF15_05025
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.412
Your Current Organism:
Pyrodictium occultum
NCBI taxonomy Id: 2309
Other names: DSM 2709, JCM 9393, NBRC 100438, P. occultum, strain PL-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.