STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF15_08055Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)    
Predicted Functional Partners:
CF15_08050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.542
CF15_00290
Transcription factor TFIIIC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.514
CF15_02415
Sulfide reductase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.504
CF15_04440
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.504
CF15_06845
Fe-S cluster protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.504
CF15_07115
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.504
tfe
Transcription factor; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexes. Seems to [...]
  
   
 0.452
CF15_08060
Dehypoxanthine futalosine cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.451
CF15_08065
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.451
CF15_08070
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.431
Your Current Organism:
Pyrodictium occultum
NCBI taxonomy Id: 2309
Other names: DSM 2709, JCM 9393, NBRC 100438, P. occultum, strain PL-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.