STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EST38_g13066Uncharacterized protein. (362 aa)    
Predicted Functional Partners:
EST38_g14244
Reverse transcriptase domain-containing protein.
 
     0.743
EST38_g41
dUTPase domain-containing protein.
    
  0.651
EST38_g11820
Reverse transcriptase domain-containing protein.
 
     0.649
EST38_g12373
Reverse transcriptase domain-containing protein.
 
     0.641
EST38_g5093
Reverse transcriptase domain-containing protein.
 
     0.633
EST38_g2793
WD_REPEATS_REGION domain-containing protein.
    
 0.618
EST38_g13823
Uncharacterized protein.
 
     0.583
EST38_g13657
Reverse transcriptase domain-containing protein.
 
     0.541
EST38_g14022
Reverse transcriptase domain-containing protein.
 
     0.540
EST38_g1126
Uncharacterized protein.
    
  0.517
Your Current Organism:
Psathyrella aberdarensis
NCBI taxonomy Id: 2316362
Other names: GLM-F116094, Lacrymaria sp. EB-2018, P. aberdarensis, Psathyrella aberdarensis A. Melzer, Kimani & R. Ullrich, 2018
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