STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EST38_g6848Uncharacterized protein. (738 aa)    
Predicted Functional Partners:
EST38_g12134
Uncharacterized protein.
  
 
 0.780
EST38_g2793
WD_REPEATS_REGION domain-containing protein.
    
 0.703
EST38_g6657
Uncharacterized protein.
   
 0.676
EST38_g13336
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.672
EST38_g4474
F-box domain-containing protein.
    
 0.672
EST38_g6537
WD_REPEATS_REGION domain-containing protein.
    
 0.663
EST38_g4861
B30.2/SPRY domain-containing protein.
    
 0.663
EST38_g3125
BAH domain-containing protein.
    
 
 0.620
EST38_g3303
Histone H2A; Belongs to the histone H2A family.
    
 0.599
EST38_g10643
Histone H2B; Belongs to the histone H2B family.
    
 0.565
Your Current Organism:
Psathyrella aberdarensis
NCBI taxonomy Id: 2316362
Other names: GLM-F116094, Lacrymaria sp. EB-2018, P. aberdarensis, Psathyrella aberdarensis A. Melzer, Kimani & R. Ullrich, 2018
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.