CVT26_001605 protein (Gymnopilus dilepis) - STRING interaction network

Nodes:

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second shell of interactors

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filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

CVT26_001605

Ribosomal_L30 domain-containing protein. (148 aa)

Predicted Functional Partners:

CVT26_000036

0.993

CVT26_008523

0.993

CVT26_006329

0.993

CVT26_010347

0.990

CVT26_007028

0.988

CVT26_007869

0.987

CVT26_004288

0.987

CVT26_005358

0.985

CVT26_001249

0.983

CVT26_014143

0.981

Your Current Organism:

Gymnopilus dilepis

NCBI taxonomy Id: 231916
Other names: Agaricus dilepis, G. dilepis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CVT26_000036	CVT26_001249	A0A409VGP2	A0A409Y229	Uncharacterized protein.	Uncharacterized protein.	0.990
CVT26_000036	CVT26_001605	A0A409VGP2	A0A409VSW4	Uncharacterized protein.	Ribosomal_L30 domain-containing protein.	0.993
CVT26_000036	CVT26_004288	A0A409VGP2	A0A409YVH4	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.993
CVT26_000036	CVT26_005358	A0A409VGP2	A0A409YSX5	Uncharacterized protein.	Uncharacterized protein.	0.986
CVT26_000036	CVT26_006329	A0A409VGP2	A0A409Y0R0	Uncharacterized protein.	Uncharacterized protein.	0.995
CVT26_000036	CVT26_007028	A0A409VGP2	A0A409VN85	Uncharacterized protein.	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.	0.986
CVT26_000036	CVT26_007869	A0A409VGP2	A0A409YK60	Uncharacterized protein.	Uncharacterized protein.	0.990
CVT26_000036	CVT26_008523	A0A409VGP2	A0A409XXK1	Uncharacterized protein.	Uncharacterized protein.	0.993
CVT26_000036	CVT26_010347	A0A409VGP2	A0A409W4V9	Uncharacterized protein.	Uncharacterized protein.	0.986
CVT26_000036	CVT26_014143	A0A409VGP2	A0A409VUD4	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein.	0.987
CVT26_001249	CVT26_000036	A0A409Y229	A0A409VGP2	Uncharacterized protein.	Uncharacterized protein.	0.990
CVT26_001249	CVT26_001605	A0A409Y229	A0A409VSW4	Uncharacterized protein.	Ribosomal_L30 domain-containing protein.	0.983
CVT26_001249	CVT26_004288	A0A409Y229	A0A409YVH4	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.997
CVT26_001249	CVT26_005358	A0A409Y229	A0A409YSX5	Uncharacterized protein.	Uncharacterized protein.	0.985
CVT26_001249	CVT26_006329	A0A409Y229	A0A409Y0R0	Uncharacterized protein.	Uncharacterized protein.	0.987
CVT26_001249	CVT26_007028	A0A409Y229	A0A409VN85	Uncharacterized protein.	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.	0.996
CVT26_001249	CVT26_007869	A0A409Y229	A0A409YK60	Uncharacterized protein.	Uncharacterized protein.	0.998
CVT26_001249	CVT26_008523	A0A409Y229	A0A409XXK1	Uncharacterized protein.	Uncharacterized protein.	0.995
CVT26_001249	CVT26_010347	A0A409Y229	A0A409W4V9	Uncharacterized protein.	Uncharacterized protein.	0.995
CVT26_001249	CVT26_014143	A0A409Y229	A0A409VUD4	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein.	0.997

page 1 of 6

Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

13

PPI enrichment p-value:

< 1.0e-16

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0097588

Archaeal or bacterial-type flagellum-dependent cell motility

9 of 30

2.11

5.84

5.20e-15

GO:0071973

Bacterial-type flagellum-dependent cell motility

8 of 25

2.14

5.49

1.34e-13

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003774

Cytoskeletal motor activity

5 of 6

2.55

4.18

8.88e-09

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009288

Bacterial-type flagellum

10 of 27

2.2

7.45

3.88e-19

GO:0009425

Bacterial-type flagellum basal body

9 of 20

2.29

7.38

8.75e-18

GO:0030694

Bacterial-type flagellum basal body, rod

5 of 8

2.43

4.58

7.75e-10

GO:0009426

Bacterial-type flagellum basal body, distal rod

3 of 3

2.63

2.89

4.14e-06

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:35056531

(2021) Brucella and Its Hidden Flagellar System.

6 of 14

2.26

4.53

3.27e-10

PMID:34946191

(2021) Gene Analysis of Listeria monocytogenes Suspended Aggregates Induced by Ralstonia insidiosa Cell-Free Supernatants under Nutrient-Poor Environments.

4 of 9

2.28

2.94

1.61e-06

PMID:34867860

(2021) The FtcR-Like Protein ActR in Azorhizobium caulinodans ORS571 Is Involved in Bacterial Motility and Symbiosis With the Host Plant.

3 of 14

1.96

1.61

0.00060

PMID:31001223

(2019) Identification of Cbp1, a c-di-GMP Binding Chemoreceptor in Azorhizobium caulinodans ORS571 Involved in Chemotaxis and Nodulation of the Host Plant.

2 of 6

2.16

1.07

0.0098

PMID:22174640

(2011) Environmental signals and regulatory pathways that influence exopolysaccharide production in rhizobia.

2 of 11

1.89

0.87

0.0217

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4226

Cytoskeletal motor activity, and Bacterial-type flagellum basal body, rod

10 of 12

2.55

9.73

1.72e-21

CL:4224

Flagellar assembly

11 of 19

2.39

9.53

9.29e-23

CL:4228

Bacterial-type flagellum basal body, rod

6 of 6

2.63

5.89

3.39e-12

CL:4240

Cytoskeletal motor activity

4 of 5

2.54

3.49

2.21e-07

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

azc02040

Flagellar assembly

11 of 29

2.21

8.34

4.25e-22

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0009288

Bacterial-type flagellum

10 of 32

2.13

6.83

3.45e-18

GOCC:0009425

Bacterial-type flagellum basal body

8 of 22

2.19

5.96

1.69e-14

GOCC:0009426

Bacterial-type flagellum basal body, distal rod

2 of 2

2.63

1.53

0.0016

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0282

Flagellum

9 of 26

2.17

6.47

2.69e-16

KW-0975

Bacterial flagellum

6 of 15

2.23

4.7

9.03e-11

KW-0574

Periplasm

2 of 8

2.03

1.05

0.0099

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00460

Flagella basal body rod protein

3 of 5

2.41

1.85

0.00034

PF06429

Flagellar basal body rod FlgEFG protein C-terminal

3 of 6

2.33

1.84

0.00034

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR001444

Flagellar basal body rod protein, N-terminal

3 of 5

2.41

1.64

0.00090

IPR010930

Flagellar basal-body/hook protein, C-terminal domain

3 of 6

2.33

1.62

0.00090

IPR019776

Flagellar basal body rod protein, conserved site

2 of 4

2.33

0.75

0.0425

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