STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO04572.1MarR family protein. (155 aa)    
Predicted Functional Partners:
SIO04559.1
ABC-2 type transport system permease protein.
 
     0.770
SIO04545.1
ABC-2 type transport system ATP-binding protein.
 
     0.724
SIN84320.1
Protein of unknown function.
  
     0.465
SIO03282.1
Tetratricopeptide repeat-containing protein.
  
     0.447
SIO22420.1
Transcriptional regulator, TetR family; Manually curated.
  
     0.438
Your Current Organism:
Agromyces cerinus
NCBI taxonomy Id: 232089
Other names: A. cerinus subsp. cerinus, Agromyces cerinus subsp. cerinus
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