STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnzUnannotated protein; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (320 aa)    
Predicted Functional Partners:
BDK62_101565
Unannotated protein.
   
   0.900
GCA_000712975_00375
Unannotated protein.
       0.586
GCA_000712975_00376
Unannotated protein.
       0.586
rnpA
Unannotated protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
     
 0.551
BDK62_103103
Unannotated protein.
       0.546
BDK62_12111
Unannotated protein; Belongs to the glucose-6-phosphate 1-epimerase family.
    
   0.536
BDK62_102230
Unannotated protein.
  
 
 0.504
rne
Unannotated protein; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
  
 
 0.504
GCA_000712975_00465
Unannotated protein.
     
 0.492
GCA_000712975_00374
Unannotated protein.
 
    
0.471
Your Current Organism:
Halomonas alkaliantarctica
NCBI taxonomy Id: 232346
Other names: ATCC BAA-848, DSM 15686, H. alkaliantarctica, Halomonas alkaliantarctica Poli et al. 2011, Halomonas sp. AP-2003, strain CRSS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.