STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000712975_02152Unannotated protein. (125 aa)    
Predicted Functional Partners:
argG
Unannotated protein; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
       0.857
GCA_000712975_02153
Unannotated protein.
       0.797
rnt
Unannotated protein; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis.
       0.709
GCA_000712975_01892
Unannotated protein.
  
     0.587
BDK62_113139
Unannotated protein.
  
     0.579
GCA_000712975_02181
Unannotated protein.
  
     0.571
BDK62_103280
Unannotated protein.
  
     0.554
BDK62_11453
Unannotated protein.
  
     0.553
BDK62_102439
Unannotated protein.
  
     0.539
BDK62_106236
Unannotated protein.
  
     0.531
Your Current Organism:
Halomonas alkaliantarctica
NCBI taxonomy Id: 232346
Other names: ATCC BAA-848, DSM 15686, H. alkaliantarctica, Halomonas alkaliantarctica Poli et al. 2011, Halomonas sp. AP-2003, strain CRSS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.