Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BDK62_101475 | BDK62_103315 | GCA_000712975_02498 | GCA_000712975_03198 | Unannotated protein; Belongs to the DapA family. | Unannotated protein. | 0.942 |
BDK62_101475 | BDK62_10364 | GCA_000712975_02498 | GCA_000712975_00415 | Unannotated protein; Belongs to the DapA family. | Unannotated protein; Belongs to the aspartokinase family. | 0.696 |
BDK62_101475 | BDK62_111116 | GCA_000712975_02498 | GCA_000712975_02175 | Unannotated protein; Belongs to the DapA family. | Unannotated protein. | 0.791 |
BDK62_101475 | asd | GCA_000712975_02498 | GCA_000712975_00234 | Unannotated protein; Belongs to the DapA family. | Unannotated protein; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.963 |
BDK62_101475 | dapA | GCA_000712975_02498 | GCA_000712975_00935 | Unannotated protein; Belongs to the DapA family. | Unannotated protein; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.951 |
BDK62_101475 | dapB | GCA_000712975_02498 | GCA_000712975_02891 | Unannotated protein; Belongs to the DapA family. | Unannotated protein; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.988 |
BDK62_101475 | fusA | GCA_000712975_02498 | GCA_000712975_03004 | Unannotated protein; Belongs to the DapA family. | Unannotated protein; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.648 |
BDK62_101475 | gatC | GCA_000712975_02498 | GCA_000712975_01875 | Unannotated protein; Belongs to the DapA family. | Unannotated protein; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. | 0.717 |
BDK62_101475 | rpsG | GCA_000712975_02498 | GCA_000712975_03005 | Unannotated protein; Belongs to the DapA family. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.636 |
BDK62_101475 | rpsO | GCA_000712975_02498 | GCA_000712975_02873 | Unannotated protein; Belongs to the DapA family. | Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.637 |
BDK62_103315 | BDK62_101475 | GCA_000712975_03198 | GCA_000712975_02498 | Unannotated protein. | Unannotated protein; Belongs to the DapA family. | 0.942 |
BDK62_103315 | BDK62_10364 | GCA_000712975_03198 | GCA_000712975_00415 | Unannotated protein. | Unannotated protein; Belongs to the aspartokinase family. | 0.966 |
BDK62_103315 | BDK62_111116 | GCA_000712975_03198 | GCA_000712975_02175 | Unannotated protein. | Unannotated protein. | 0.672 |
BDK62_103315 | asd | GCA_000712975_03198 | GCA_000712975_00234 | Unannotated protein. | Unannotated protein; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.984 |
BDK62_103315 | dapA | GCA_000712975_03198 | GCA_000712975_00935 | Unannotated protein. | Unannotated protein; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.953 |
BDK62_103315 | dapB | GCA_000712975_03198 | GCA_000712975_02891 | Unannotated protein. | Unannotated protein; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.614 |
BDK62_10364 | BDK62_101475 | GCA_000712975_00415 | GCA_000712975_02498 | Unannotated protein; Belongs to the aspartokinase family. | Unannotated protein; Belongs to the DapA family. | 0.696 |
BDK62_10364 | BDK62_103315 | GCA_000712975_00415 | GCA_000712975_03198 | Unannotated protein; Belongs to the aspartokinase family. | Unannotated protein. | 0.966 |
BDK62_10364 | BDK62_111116 | GCA_000712975_00415 | GCA_000712975_02175 | Unannotated protein; Belongs to the aspartokinase family. | Unannotated protein. | 0.775 |
BDK62_10364 | asd | GCA_000712975_00415 | GCA_000712975_00234 | Unannotated protein; Belongs to the aspartokinase family. | Unannotated protein; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.991 |
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