STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDK62_106119Unannotated protein. (104 aa)    
Predicted Functional Partners:
GCA_000712975_02925
Unannotated protein.
       0.857
rsmI
Unannotated protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
    0.625
BDK62_106121
Unannotated protein.
       0.588
GCA_000712975_02923
Unannotated protein.
       0.498
BDK62_11483
Unannotated protein; Belongs to the ribulose-phosphate 3-epimerase family.
       0.473
Your Current Organism:
Halomonas alkaliantarctica
NCBI taxonomy Id: 232346
Other names: ATCC BAA-848, DSM 15686, H. alkaliantarctica, Halomonas alkaliantarctica Poli et al. 2011, Halomonas sp. AP-2003, strain CRSS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.