STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000712975_03247Unannotated protein. (317 aa)    
Predicted Functional Partners:
GCA_000712975_03248
Unannotated protein.
 
 
  0.990
GCA_000712975_03228
Unannotated protein.
 
 
 0.970
GCA_000712975_03249
Unannotated protein.
 
 
 0.941
GCA_000712975_03229
Unannotated protein.
 
 0.913
GCA_000712975_03239
Unannotated protein.
 
 
 0.898
GCA_000712975_03260
Unannotated protein.
 
 
 0.887
GCA_000712975_03231
Unannotated protein.
 
 
 0.868
GCA_000712975_03246
Unannotated protein.
 
    0.816
GCA_000712975_01840
Unannotated protein.
 
 
 0.776
GCA_000712975_03262
Unannotated protein.
 
 0.769
Your Current Organism:
Halomonas alkaliantarctica
NCBI taxonomy Id: 232346
Other names: ATCC BAA-848, DSM 15686, H. alkaliantarctica, Halomonas alkaliantarctica Poli et al. 2011, Halomonas sp. AP-2003, strain CRSS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.