Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CB0101_00955 | aroA | GCA_000179235_01284 | GCA_000179235_01895 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.844 |
CB0101_00955 | aroB | GCA_000179235_01284 | GCA_000179235_01582 | Unannotated protein. | Unannotated protein; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.758 |
CB0101_00955 | aroC | GCA_000179235_01284 | GCA_000179235_00302 | Unannotated protein. | Unannotated protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.787 |
CB0101_00955 | aroK | GCA_000179235_01284 | GCA_000179235_00571 | Unannotated protein. | Unannotated protein; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.989 |
CB0101_03655 | CB0101_03660 | GCA_000179235_01897 | GCA_000179235_01896 | Unannotated protein; Belongs to the UbiD family. | Unannotated protein. | 0.778 |
CB0101_03655 | CB0101_03670 | GCA_000179235_01897 | GCA_000179235_01894 | Unannotated protein; Belongs to the UbiD family. | Unannotated protein. | 0.660 |
CB0101_03655 | aroA | GCA_000179235_01897 | GCA_000179235_01895 | Unannotated protein; Belongs to the UbiD family. | Unannotated protein; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.670 |
CB0101_03655 | glmU | GCA_000179235_01897 | GCA_000179235_01893 | Unannotated protein; Belongs to the UbiD family. | Unannotated protein; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. | 0.598 |
CB0101_03660 | CB0101_03655 | GCA_000179235_01896 | GCA_000179235_01897 | Unannotated protein. | Unannotated protein; Belongs to the UbiD family. | 0.778 |
CB0101_03660 | CB0101_03670 | GCA_000179235_01896 | GCA_000179235_01894 | Unannotated protein. | Unannotated protein. | 0.651 |
CB0101_03660 | aroA | GCA_000179235_01896 | GCA_000179235_01895 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.651 |
CB0101_03660 | glmU | GCA_000179235_01896 | GCA_000179235_01893 | Unannotated protein. | Unannotated protein; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. | 0.625 |
CB0101_03670 | CB0101_03655 | GCA_000179235_01894 | GCA_000179235_01897 | Unannotated protein. | Unannotated protein; Belongs to the UbiD family. | 0.660 |
CB0101_03670 | CB0101_03660 | GCA_000179235_01894 | GCA_000179235_01896 | Unannotated protein. | Unannotated protein. | 0.651 |
CB0101_03670 | aroA | GCA_000179235_01894 | GCA_000179235_01895 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.789 |
CB0101_03670 | glmU | GCA_000179235_01894 | GCA_000179235_01893 | Unannotated protein. | Unannotated protein; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. | 0.723 |
CB0101_10610 | aroA | GCA_000179235_00509 | GCA_000179235_01895 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.987 |
CB0101_10610 | aroB | GCA_000179235_00509 | GCA_000179235_01582 | Unannotated protein. | Unannotated protein; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.784 |
CB0101_10610 | aroC | GCA_000179235_00509 | GCA_000179235_00302 | Unannotated protein. | Unannotated protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.804 |
CB0101_10610 | aroK | GCA_000179235_00509 | GCA_000179235_00571 | Unannotated protein. | Unannotated protein; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.605 |
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