STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIS52011.1Transcriptional regulator, LacI family. (336 aa)    
Predicted Functional Partners:
sigI
RNA polymerase sigma factor SigI; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; Belongs to the sigma-70 factor family. SigI subfamily.
      
 0.670
crh
HPr-like protein Crh.
   
 
 0.641
srfAB
Surfactin synthase subunit 2; Belongs to the ATP-dependent AMP-binding enzyme family.
    
 
 0.639
AIS52010.1
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
       0.618
AIS52012.1
Trehalose and maltose hydrolase.
     
 0.593
AIS52013.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; TC 3.A.1.1.-.
 
    0.469
AIS52880.1
Diguanylate cyclase and metal dependent phosphohydrolase.
   
 
 0.453
AIS52009.1
Small acid-soluble spore protein alpha/beta type.
       0.433
groS
10 kDa chaperonin; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.
      
 0.425
Your Current Organism:
Thermoanaerobacter kivui
NCBI taxonomy Id: 2325
Other names: ATCC 33488, Acetogenium kivuense, Acetogenium kivui, DSM 2030, T. kivui, Thermoanaerobacter kivuense
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