STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csm4CRISPR subtype III-A-associated RAMP protein Csm4; Subtupe III-A/Mtube, RAMP superfamily, COG1567. (327 aa)    
Predicted Functional Partners:
csm5
CRISPR subtype III-A-associated RAMP protein Csm5; Subtupe III-A/Mtube, RAMP superfamily, COG1332.
 
 
 0.996
csm3
CRISPR subtype III-A-associated RAMP protein Csm3; Subtupe III-A/Mtube, RAMP superfamily, COG1337.
 
 
 0.995
csm2
CRISPR subtype III-A-associated RAMP protein Csm2; Subtupe III-A/Mtube, COG1421.
 
 
 0.992
cas10
CRISPR type III-associated protein Cas10/Csm1; 'type III; COG1353'.
 
 
 0.986
AIS52633.1
CRISPR-associated RAMP superfamily protein.
  
 
 0.849
AIS53305.1
CRISPR-associated RAMP superfamily protein; COG1604.
  
 
 0.849
AIS52884.1
Hypothetical protein.
       0.779
cmr2
CRISPR subtype III-B-associated RAMP protein Cmr2/Cas10; Subtype III-B/polymerase-RAMP module, COG1353.
  
 
 0.775
thiS
Thiamine biosynthesis protein ThiS.
  
     0.703
AIS52892.1
Hypothetical protein.
 
     0.698
Your Current Organism:
Thermoanaerobacter kivui
NCBI taxonomy Id: 2325
Other names: ATCC 33488, Acetogenium kivuense, Acetogenium kivui, DSM 2030, T. kivui, Thermoanaerobacter kivuense
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.