STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytaFSporulation protein YtaF; Probably functions as a manganese efflux pump. (209 aa)    
Predicted Functional Partners:
spoIIIAE
Stage III sporulation protein AE.
  
     0.616
AIS52865.1
Sporulation protein.
  
     0.612
spoIIIAB
Stage III sporulation protein AB.
  
     0.585
spoIIIAD
Stage III sporulation protein AD.
  
     0.548
AIS53048.1
Hypothetical protein.
       0.527
coaE
dephospho-CoA kinase CoaE; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
    0.522
ylbJ
Sporulation integral membrane protein YlbJ.
  
     0.512
yabP
Sporulation protein YabP.
  
   
 0.503
gerKC
Spore germination protein KC.
  
    0.495
spoIIE
Stage II sporulation protein E.
  
     0.495
Your Current Organism:
Thermoanaerobacter kivui
NCBI taxonomy Id: 2325
Other names: ATCC 33488, Acetogenium kivuense, Acetogenium kivui, DSM 2030, T. kivui, Thermoanaerobacter kivuense
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.