STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytaFSporulation protein YtaF; Probably functions as a manganese efflux pump. (209 aa)    
Predicted Functional Partners:
spoIIIAE
Stage III sporulation protein AE.
  
     0.616
AIS52865.1
Sporulation protein.
  
     0.612
coaE
dephospho-CoA kinase CoaE; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
    0.595
spoIIIAB
Stage III sporulation protein AB.
  
     0.585
spoIIIAD
Stage III sporulation protein AD.
  
     0.548
AIS52697.1
Sporulation protein, YlmC/YmxH family.
  
  
 0.539
AIS53048.1
Hypothetical protein.
       0.527
ylbJ
Sporulation integral membrane protein YlbJ.
  
     0.512
gerKC
Spore germination protein KC.
  
    0.497
spoIIE
Stage II sporulation protein E.
  
     0.495
Your Current Organism:
Thermoanaerobacter kivui
NCBI taxonomy Id: 2325
Other names: ATCC 33488, Acetogenium kivuense, Acetogenium kivui, DSM 2030, T. kivui, Thermoanaerobacter kivuense
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