Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIS53082.1YbbR family protein. (396 aa)    
Predicted Functional Partners:
dacA
Hypothetical protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.972
AIS53573.1
Phosphoesterase RecJ domain-containing protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.
  
   
 0.571
AIS53084.1
Putative periplasmic or secreted lipoprotein.
       0.545
AIS53523.1
IstB-like ATP binding protein.
 
     0.496
buk2
Butyrate kinase 2; Belongs to the acetokinase family.
       0.481
ptb2
Phosphate butyryltransferase Ptb.
  
    0.473
AIS53522.1
DnaD and phage-associated domain-containing protein.
 
     0.463
AIS51370.1
Cell surface receptor IPT/TIG domain-containing protein.
  
     0.458
AIS51669.1
Spore germination protein-like gmad2.
  
     0.451
AIS53077.1
Hypothetical protein.
  
    0.443
Your Current Organism:
Thermoanaerobacter kivui
NCBI taxonomy Id: 2325
Other names: ATCC 33488, Acetogenium kivuense, Acetogenium kivui, DSM 2030, T. kivui, Thermoanaerobacter kivuense
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