AIS53091.1 protein (Thermoanaerobacter kivui)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AIS53091.1

Coat F domain-containing protein. (91 aa)

Predicted Functional Partners:

AIS53092.1

0.737

AIS53559.1

0.655

thyX

0.617

AIS51669.1

0.594

spoIIP

0.580

AIS52687.1

0.575

trxB

0.543

AIS53093.1

0.535

AIS52160.1

0.518

AIS53239.1

0.471

Your Current Organism:

Thermoanaerobacter kivui

NCBI taxonomy Id: 2325
Other names: ATCC 33488, Acetogenium kivuense, Acetogenium kivui, DSM 2030, T. kivui, Thermoanaerobacter kivuense

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIS51669.1	AIS52160.1	TKV_c04670	TKV_c09830	Spore germination protein-like gmad2.	Stage II sporulation protein P.	0.458
AIS51669.1	AIS52687.1	TKV_c04670	TKV_c15220	Spore germination protein-like gmad2.	Hypothetical protein.	0.453
AIS51669.1	AIS53091.1	TKV_c04670	TKV_c19450	Spore germination protein-like gmad2.	Coat F domain-containing protein.	0.594
AIS51669.1	spoIIP	TKV_c04670	TKV_c15210	Spore germination protein-like gmad2.	Stage II sporulation protein P.	0.483
AIS51669.1	thyX	TKV_c04670	TKV_c19480	Spore germination protein-like gmad2.	Thymidylate synthase complementing protein ThyX; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.	0.456
AIS52160.1	AIS51669.1	TKV_c09830	TKV_c04670	Stage II sporulation protein P.	Spore germination protein-like gmad2.	0.458
AIS52160.1	AIS52687.1	TKV_c09830	TKV_c15220	Stage II sporulation protein P.	Hypothetical protein.	0.519
AIS52160.1	AIS53091.1	TKV_c09830	TKV_c19450	Stage II sporulation protein P.	Coat F domain-containing protein.	0.518
AIS52160.1	spoIIP	TKV_c09830	TKV_c15210	Stage II sporulation protein P.	Stage II sporulation protein P.	0.766
AIS52687.1	AIS51669.1	TKV_c15220	TKV_c04670	Hypothetical protein.	Spore germination protein-like gmad2.	0.453
AIS52687.1	AIS52160.1	TKV_c15220	TKV_c09830	Hypothetical protein.	Stage II sporulation protein P.	0.519
AIS52687.1	AIS53091.1	TKV_c15220	TKV_c19450	Hypothetical protein.	Coat F domain-containing protein.	0.575
AIS52687.1	spoIIP	TKV_c15220	TKV_c15210	Hypothetical protein.	Stage II sporulation protein P.	0.989
AIS53091.1	AIS51669.1	TKV_c19450	TKV_c04670	Coat F domain-containing protein.	Spore germination protein-like gmad2.	0.594
AIS53091.1	AIS52160.1	TKV_c19450	TKV_c09830	Coat F domain-containing protein.	Stage II sporulation protein P.	0.518
AIS53091.1	AIS52687.1	TKV_c19450	TKV_c15220	Coat F domain-containing protein.	Hypothetical protein.	0.575
AIS53091.1	AIS53092.1	TKV_c19450	TKV_c19460	Coat F domain-containing protein.	Hypothetical protein.	0.737
AIS53091.1	AIS53093.1	TKV_c19450	TKV_c19470	Coat F domain-containing protein.	MazG nucleotide pyrophosphohydrolase.	0.535
AIS53091.1	AIS53239.1	TKV_c19450	TKV_c21060	Coat F domain-containing protein.	Hypothetical protein.	0.471
AIS53091.1	AIS53559.1	TKV_c19450	TKV_c24410	Coat F domain-containing protein.	Transcriptional regulator, LuxR family.	0.655