Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Ajs_0804PFAM: type II secretion system protein; KEGG: pol:Bpro_0842 type II secretion system protein. (405 aa)    
Predicted Functional Partners:
Ajs_0805
Type IV-A pilus assembly ATPase PilB; KEGG: rfr:Rfer_2902 type II secretion system protein E; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase.
 
 
 0.990
Ajs_0803
Type 4 prepilin peptidase 1; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.980
Ajs_0666
KEGG: pol:Bpro_1330 type II secretion system protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
 
 0.951
Ajs_3413
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_3214 type II secretion system protein E.
 
 
 0.951
Ajs_0730
TIGRFAM: type IV pilus assembly protein PilM; KEGG: pol:Bpro_0781 type IV pilus assembly protein PilM.
 
 
 
 0.849
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.848
Ajs_0420
Pilus retraction ATPase PilT; KEGG: pol:Bpro_0396 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
  
 0.822
Ajs_0675
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: pol:Bpro_1321 general secretion pathway protein G.
 
  
 0.819
Ajs_0418
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_0395 twitching motility protein.
 
   
 0.797
Ajs_2068
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_1995 twitching motility protein.
 
   
 0.796
Your Current Organism:
Acidovorax sp. JS42
NCBI taxonomy Id: 232721
Other names: A. sp. JS42
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