STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ajs_0828KEGG: rpb:RPB_2979 hypothetical protein. (465 aa)    
Predicted Functional Partners:
Ajs_0826
DNA ligase III-like protein; KEGG: neu:NE1884 possible homolog of eukaryotic DNA ligase III.
 
     0.940
Ajs_0827
KEGG: rpb:RPB_2980 hypothetical protein.
       0.800
Ajs_0829
KEGG: gox:GOX1506 putative chromosome segregation SMC protein.
 
     0.637
Ajs_0833
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: hch:HCH_03804 distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster.
 
     0.567
Ajs_0831
PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5321 ISPsy20, transposase IstA.
       0.562
Ajs_0830
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rfr:Rfer_4202 IstB-like ATP-binding protein.
       0.557
Ajs_0825
Hypothetical protein; KEGG: nar:Saro_0358 putative restriction endonuclease.
       0.542
Ajs_0832
DEAD-like helicase-like protein; SMART: DEAD-like helicases-like; KEGG: hch:HCH_03805 superfamily II DNA/RNA helicase, SNF2 family.
 
     0.539
Ajs_1430
KEGG: ecs:pO157p35 similar to SwissProt accession number P19593.
 
    0.468
Ajs_2219
PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: ppu:PP_3868 group II intron-encoding maturase.
 
    0.433
Your Current Organism:
Acidovorax sp. JS42
NCBI taxonomy Id: 232721
Other names: A. sp. JS42
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.