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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ajs_1663KEGG: rfr:Rfer_2656 hypothetical protein. (895 aa)    
Predicted Functional Partners:
Ajs_1718
KEGG: rfr:Rfer_2256 DNA-directed DNA polymerase.
  
 
 0.800
Ajs_4000
PFAM: regulatory protein, MarR; KEGG: pol:Bpro_4686 transcriptional regulator, MarR family.
  
     0.773
Ajs_0446
KEGG: pol:Bpro_0443 hypothetical protein.
  
     0.770
Ajs_0869
KEGG: rfr:Rfer_1293 hypothetical protein.
  
     0.769
Ajs_2893
PFAM: HemY domain protein; KEGG: pol:Bpro_3661 putative porphyrin biosynthesis related protein.
 
   
 0.769
Ajs_0169
PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: pol:Bpro_1033 hypothetical protein.
  
     0.764
Ajs_3561
PFAM: protein of unknown function DUF490; KEGG: rfr:Rfer_1593 protein of unknown function DUF490.
 
    0.758
Ajs_2488
PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3076 major facilitator superfamily MFS_1.
  
     0.753
Ajs_0353
PFAM: SEC-C motif domain protein; KEGG: reu:Reut_B5710 sec-C motif.
 
  
 0.752
Ajs_3145
KEGG: pol:Bpro_3120 putative transcriptional regulator.
  
     0.751
Your Current Organism:
Acidovorax sp. JS42
NCBI taxonomy Id: 232721
Other names: A. sp. JS42
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