STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ajs_2863PFAM: protein of unknown function DUF938; KEGG: tbd:Tbd_0032 hypothetical protein. (214 aa)    
Predicted Functional Partners:
Ajs_2862
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sme:SMc04167 putative histidine-rich transporter transmembrane protein.
       0.758
Ajs_2861
PFAM: protein of unknown function DUF156; KEGG: atc:AGR_C_1623 hypothetical protein.
       0.752
Ajs_2864
PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: aci:ACIAD0422 hypothetical protein.
       0.697
Ajs_1760
PFAM: protein of unknown function DUF482; KEGG: pol:Bpro_2308 protein of unknown function DUF482.
 
     0.451
Ajs_2860
KEGG: rso:RSp1612 probable tartrate dehydrogenase oxidoreductase protein; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase.
       0.431
Your Current Organism:
Acidovorax sp. JS42
NCBI taxonomy Id: 232721
Other names: A. sp. JS42
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.