STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ajs_3791PFAM: response regulator receiver; KEGG: rfr:Rfer_0566 response regulator receiver domain protein. (120 aa)    
Predicted Functional Partners:
Ajs_3790
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rfr:Rfer_0567 CheA signal transduction histidine kinases.
 0.994
Ajs_3789
PFAM: CheW domain protein; KEGG: rfr:Rfer_0568 CheW protein.
 
 
 0.948
Ajs_3818
Chemotaxis phosphatase, CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
 
 
 0.928
Ajs_3817
PFAM: response regulator receiver; KEGG: rfr:Rfer_3704 response regulator receiver domain protein.
  
  
 
0.917
Ajs_3799
TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: rfr:Rfer_0558 flagellar motor switch FliN.
   
 0.916
Ajs_3664
PFAM: chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: rso:RSc1155 probable methyl-accepting chemotaxis transducer transmembrane protein.
 
  0.900
Ajs_3430
PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2507 methyl-accepting chemotaxis sensory transducer.
 
  0.899
Ajs_1017
PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2507 methyl-accepting chemotaxis sensory transducer.
 
  0.898
Ajs_3772
PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_3937 methyl-accepting chemotaxis sensory transducer.
 
  0.897
Ajs_2152
PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_3609 methyl-accepting chemotaxis sensory transducer.
 
  0.895
Your Current Organism:
Acidovorax sp. JS42
NCBI taxonomy Id: 232721
Other names: A. sp. JS42
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