STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT66732.1Type II secretion system protein F (GspF). (398 aa)    
Predicted Functional Partners:
SIT66728.1
Type IV pilus assembly protein PilB.
 
 0.998
SIT68734.1
Type IV pilus secretin (or competence protein) PilQ.
 
 
 
 0.930
SIT68867.1
Leader peptidase (prepilin peptidase) / N-methyltransferase; Belongs to the peptidase A24 family.
 
  
 0.899
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.801
SIT66120.1
Competence protein ComEC.
  
  
 0.796
SIT68726.1
Type IV pilus assembly protein PilM.
   
 
 0.736
SIT66479.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
    0.644
zapD
Cell division protein ZapD; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity.
       0.615
SIT65619.1
Signal transduction histidine kinase.
 
   
 0.542
SIT68738.1
Type IV pilus assembly protein PilA.
 
   
 0.539
Your Current Organism:
Ectothiorhodosinus mongolicus
NCBI taxonomy Id: 233100
Other names: DSM 15479, E. mongolicus, Ectothiorhodosinus mongolicum, Ectothiorhodosinus mongolicus corrig. Gorlenko et al. 2007, UNIQEM U217, strain M9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.