STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT68510.1Autotransporter secretion outer membrane protein TamA. (573 aa)    
Predicted Functional Partners:
SIT68515.1
Translocation and assembly module TamB.
 
 0.992
SIT65700.1
Filamentous hemagglutinin family N-terminal domain-containing protein.
  
 
 0.802
SIT68506.1
Hypothetical protein.
       0.586
SIT68492.1
iron(III) transport system substrate-binding protein.
       0.472
SIT68498.1
iron(III) transport system permease protein.
       0.472
SIT68501.1
iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.472
SIT68518.1
Metallo-beta-lactamase family protein.
       0.464
SIT68523.1
Acetylornithine deacetylase; Manually curated.
       0.464
lptD
LPS-assembly protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
   
 0.453
SIT73103.1
Phosphomannomutase.
  
    0.410
Your Current Organism:
Ectothiorhodosinus mongolicus
NCBI taxonomy Id: 233100
Other names: DSM 15479, E. mongolicus, Ectothiorhodosinus mongolicum, Ectothiorhodosinus mongolicus corrig. Gorlenko et al. 2007, UNIQEM U217, strain M9
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