STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT68726.1Type IV pilus assembly protein PilM. (299 aa)    
Predicted Functional Partners:
SIT68734.1
Type IV pilus secretin (or competence protein) PilQ.
 
 
 0.952
SIT68730.1
Tfp pilus assembly protein PilN.
       0.773
SIT66728.1
Type IV pilus assembly protein PilB.
   
 
 0.736
SIT66732.1
Type II secretion system protein F (GspF).
   
 
 0.736
SIT68738.1
Type IV pilus assembly protein PilA.
     
 0.728
SIT68722.1
Penicillin-binding protein 1A.
 
     0.597
SIT68717.1
Hypothetical protein.
       0.524
SIT69998.1
Type IV fimbrial biogenesis protein FimT.
 
   
 0.494
SIT66120.1
Competence protein ComEC.
      
 0.448
SIT65554.1
Putative transposase; Partial gene; manually curated.
  
     0.434
Your Current Organism:
Ectothiorhodosinus mongolicus
NCBI taxonomy Id: 233100
Other names: DSM 15479, E. mongolicus, Ectothiorhodosinus mongolicum, Ectothiorhodosinus mongolicus corrig. Gorlenko et al. 2007, UNIQEM U217, strain M9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.