node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIT72021.1 | nusA | SAMN05216526_1554 | SAMN05216526_0509 | Transcriptional antiterminator RfaH. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.909 |
SIT72021.1 | rplF | SAMN05216526_1554 | SAMN05216526_1411 | Transcriptional antiterminator RfaH. | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.894 |
SIT72021.1 | rplK | SAMN05216526_1554 | SAMN05216526_1385 | Transcriptional antiterminator RfaH. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.894 |
SIT72021.1 | rplN | SAMN05216526_1554 | SAMN05216526_1406 | Transcriptional antiterminator RfaH. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.894 |
SIT72021.1 | rplV | SAMN05216526_1554 | SAMN05216526_1401 | Transcriptional antiterminator RfaH. | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.905 |
SIT72021.1 | rpoB | SAMN05216526_1554 | SAMN05216526_1389 | Transcriptional antiterminator RfaH. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.943 |
SIT72021.1 | rpsC | SAMN05216526_1554 | SAMN05216526_1402 | Transcriptional antiterminator RfaH. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.919 |
SIT72021.1 | rpsG | SAMN05216526_1554 | SAMN05216526_1392 | Transcriptional antiterminator RfaH. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.893 |
SIT72021.1 | rpsH | SAMN05216526_1554 | SAMN05216526_1410 | Transcriptional antiterminator RfaH. | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.894 |
SIT72021.1 | rpsJ | SAMN05216526_1554 | SAMN05216526_1395 | Transcriptional antiterminator RfaH. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.918 |
nusA | SIT72021.1 | SAMN05216526_0509 | SAMN05216526_1554 | NusA antitermination factor; Participates in both transcription termination and antitermination. | Transcriptional antiterminator RfaH. | 0.909 |
nusA | rplF | SAMN05216526_0509 | SAMN05216526_1411 | NusA antitermination factor; Participates in both transcription termination and antitermination. | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.941 |
nusA | rplK | SAMN05216526_0509 | SAMN05216526_1385 | NusA antitermination factor; Participates in both transcription termination and antitermination. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.994 |
nusA | rplN | SAMN05216526_0509 | SAMN05216526_1406 | NusA antitermination factor; Participates in both transcription termination and antitermination. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.920 |
nusA | rplV | SAMN05216526_0509 | SAMN05216526_1401 | NusA antitermination factor; Participates in both transcription termination and antitermination. | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.938 |
nusA | rpoB | SAMN05216526_0509 | SAMN05216526_1389 | NusA antitermination factor; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
nusA | rpsC | SAMN05216526_0509 | SAMN05216526_1402 | NusA antitermination factor; Participates in both transcription termination and antitermination. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.953 |
nusA | rpsG | SAMN05216526_0509 | SAMN05216526_1392 | NusA antitermination factor; Participates in both transcription termination and antitermination. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.980 |
nusA | rpsH | SAMN05216526_0509 | SAMN05216526_1410 | NusA antitermination factor; Participates in both transcription termination and antitermination. | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.958 |
nusA | rpsJ | SAMN05216526_0509 | SAMN05216526_1395 | NusA antitermination factor; Participates in both transcription termination and antitermination. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.957 |