STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANB21225.1GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)    
Predicted Functional Partners:
ANB21247.1
Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.741
ANB20091.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.738
ANB23672.1
Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.734
ANB21243.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.724
ANB21248.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.713
ANB22002.1
Heparinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.688
ANB21431.1
Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.660
ANB21249.1
Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.641
ANB21251.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.628
ANB22734.1
Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.623
Your Current Organism:
Alteromonas stellipolaris
NCBI taxonomy Id: 233316
Other names: A. stellipolaris, Alteromonas stellaepolaris, Alteromonas stellipolaris Van Trappen et al. 2004, DSM 15691, LMG 21861, LMG:21861, strain ANT 69a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.