Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ftpAFine tangled pili major subunit; May contribute to bacterial adherence, or be involved in the protection of the bacteria, or both. (190 aa)    
Predicted Functional Partners:
sdaC
Serine transporter.
    
   0.713
HD_1105
Conserved hypothetical protein.
   
    0.453
bolA
Putative transcriptional regulator, BolA; Belongs to the BolA/IbaG family.
   
  
 0.443
HD_0066
Hypothetical protein.
       0.438
HD_0069
Probable integral membrane protein.
       0.433
HD_0665
Conserved hypothetical protein.
   
    0.417
Your Current Organism:
Haemophilus ducreyi
NCBI taxonomy Id: 233412
Other names: Haemophilus ducreyi 35000HP, Haemophilus ducreyi str. 35000HP, [. ducreyi 35000HP, [Haemophilus] ducreyi 35000HP
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