Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HD_0258Probable permease. (259 aa)    
Predicted Functional Partners:
HD_0259
ABC transporter ATP binding protein.
 
 0.999
HD_0257
Conserved hypothetical protein.
 
 0.998
HD_0255
Putative anti-sigma factor B antagonist.
  
 0.973
HD_0256
Conserved hypothetical protein.
 
 
 0.972
HD_0254
Conserved hypothetical protein; Belongs to the BolA/IbaG family.
 
     0.683
vacJ
VacJ lipoprotein.
 
   
 0.611
HD_0586
Putative ABC transporter ATP-binding protein.
 
  
  0.565
HD_0552
Conserved hypothetical protein.
  
 
 0.532
HD_0553
Conserved hypothetical protein.
  
  
 0.490
murA
UDP-N-Acetyllglucosamine- 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
    0.488
Your Current Organism:
Haemophilus ducreyi
NCBI taxonomy Id: 233412
Other names: Haemophilus ducreyi 35000HP, Haemophilus ducreyi str. 35000HP, [. ducreyi 35000HP, [Haemophilus] ducreyi 35000HP
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