Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HD_0295Hypothetical protein. (117 aa)    
Predicted Functional Partners:
HD_0290
Hypothetical protein.
 
     0.807
HD_1696
Hypothetical protein.
  
     0.774
HD_0296
Hypothetical protein.
       0.625
HD_0154
Conserved hypothetical protein.
  
     0.575
HD_0538
Conserved hypothetical protein.
  
     0.571
HD_1580
Hypothetical protein.
  
     0.571
HD_0148
Conserved hypothetical protein.
  
     0.560
HD_1576
Hypothetical protein.
  
     0.469
HD_0150
Hypothetical protein.
  
     0.444
Your Current Organism:
Haemophilus ducreyi
NCBI taxonomy Id: 233412
Other names: Haemophilus ducreyi 35000HP, Haemophilus ducreyi str. 35000HP, [. ducreyi 35000HP, [Haemophilus] ducreyi 35000HP
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