Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HD_0451 | HD_0455 | HD_0451 | HD_0455 | Conserved hypothetical protein. | Putative protease. | 0.416 |
HD_0451 | HD_1051 | HD_0451 | HD_1051 | Conserved hypothetical protein. | Conserved hypothetical protein; Belongs to the SUA5 family. | 0.554 |
HD_0451 | HD_1474 | HD_0451 | HD_1474 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.945 |
HD_0451 | amiB | HD_0451 | HD_0450 | Conserved hypothetical protein. | N-acetylmuramoyl-L-alanine amidase. | 0.802 |
HD_0451 | coaD | HD_0451 | HD_0453 | Conserved hypothetical protein. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.705 |
HD_0451 | gcp | HD_0451 | HD_0471 | Conserved hypothetical protein. | Putative sialylglycoprotease; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.862 |
HD_0451 | metG | HD_0451 | HD_1054 | Conserved hypothetical protein. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.524 |
HD_0451 | orn | HD_0451 | HD_0452 | Conserved hypothetical protein. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.662 |
HD_0451 | tsaC | HD_0451 | HD_0414 | Conserved hypothetical protein. | Conserved hypothetical protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate. | 0.620 |
HD_0451 | waaA | HD_0451 | HD_0454 | Conserved hypothetical protein. | 3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.644 |
HD_0455 | HD_0451 | HD_0455 | HD_0451 | Putative protease. | Conserved hypothetical protein. | 0.416 |
HD_0455 | amiB | HD_0455 | HD_0450 | Putative protease. | N-acetylmuramoyl-L-alanine amidase. | 0.400 |
HD_0455 | coaD | HD_0455 | HD_0453 | Putative protease. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.506 |
HD_0455 | orn | HD_0455 | HD_0452 | Putative protease. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.484 |
HD_0455 | waaA | HD_0455 | HD_0454 | Putative protease. | 3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.536 |
HD_1051 | HD_0451 | HD_1051 | HD_0451 | Conserved hypothetical protein; Belongs to the SUA5 family. | Conserved hypothetical protein. | 0.554 |
HD_1051 | HD_1474 | HD_1051 | HD_1474 | Conserved hypothetical protein; Belongs to the SUA5 family. | Conserved hypothetical protein. | 0.555 |
HD_1051 | gcp | HD_1051 | HD_0471 | Conserved hypothetical protein; Belongs to the SUA5 family. | Putative sialylglycoprotease; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.570 |
HD_1474 | HD_0451 | HD_1474 | HD_0451 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.945 |
HD_1474 | HD_1051 | HD_1474 | HD_1051 | Conserved hypothetical protein. | Conserved hypothetical protein; Belongs to the SUA5 family. | 0.555 |
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