Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HD_0509Conserved possible DNA-binding protein. (166 aa)    
Predicted Functional Partners:
HD_0497
Conserved hypothetical protein.
 
    0.796
HD_0501
Possible N-acetylmuramoyl-L-alanine amidase.
 
     0.777
HD_0506
Hypothetical protein.
       0.774
HD_0507
Hypothetical protein.
       0.774
HD_0510
Hypothetical protein.
       0.773
mug-2
Mu-like bacteriophage G protein 2.
 
     0.773
HD_0515
Conserved hypothetical protein.
 
     0.767
HD_0489
Conserved hypothetical protein.
 
     0.733
HD_0514
Conserved hypothetical protein.
 
    0.730
HD_1557
Bacteriophage Mu GP30-like protein.
 
     0.717
Your Current Organism:
Haemophilus ducreyi
NCBI taxonomy Id: 233412
Other names: Haemophilus ducreyi 35000HP, Haemophilus ducreyi str. 35000HP, [. ducreyi 35000HP, [Haemophilus] ducreyi 35000HP
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