Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HD_0664 | HD_0665 | HD_0664 | HD_0665 | Hypothetical protein. | Conserved hypothetical protein. | 0.701 |
HD_0664 | holC | HD_0664 | HD_0667 | Hypothetical protein. | DNA polymerase III chi subunit. | 0.418 |
HD_0664 | tig | HD_0664 | HD_0663 | Hypothetical protein. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.538 |
HD_0665 | HD_0664 | HD_0665 | HD_0664 | Conserved hypothetical protein. | Hypothetical protein. | 0.701 |
HD_0665 | holC | HD_0665 | HD_0667 | Conserved hypothetical protein. | DNA polymerase III chi subunit. | 0.454 |
HD_0665 | tig | HD_0665 | HD_0663 | Conserved hypothetical protein. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.499 |
holC | HD_0664 | HD_0667 | HD_0664 | DNA polymerase III chi subunit. | Hypothetical protein. | 0.418 |
holC | HD_0665 | HD_0667 | HD_0665 | DNA polymerase III chi subunit. | Conserved hypothetical protein. | 0.454 |
tig | HD_0664 | HD_0663 | HD_0664 | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | Hypothetical protein. | 0.538 |
tig | HD_0665 | HD_0663 | HD_0665 | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | Conserved hypothetical protein. | 0.499 |