Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cdtA | cdtB | HD_0902 | HD_0903 | Cytolethal distending toxin protein A; CDTs are cytotoxins which induce host cell distension, growth arrest in G2/M phase, nucleus swelling, and chromatin fragmentation in HeLa cells. CdtA, along with CdtC, probably forms a heterodimeric subunit required for the delivery of CdtB. | Cytolethal distending toxin protein B. | 0.999 |
cdtA | cdtC | HD_0902 | HD_0904 | Cytolethal distending toxin protein A; CDTs are cytotoxins which induce host cell distension, growth arrest in G2/M phase, nucleus swelling, and chromatin fragmentation in HeLa cells. CdtA, along with CdtC, probably forms a heterodimeric subunit required for the delivery of CdtB. | Cytolethal distending toxin protein C. | 0.997 |
cdtB | cdtA | HD_0903 | HD_0902 | Cytolethal distending toxin protein B. | Cytolethal distending toxin protein A; CDTs are cytotoxins which induce host cell distension, growth arrest in G2/M phase, nucleus swelling, and chromatin fragmentation in HeLa cells. CdtA, along with CdtC, probably forms a heterodimeric subunit required for the delivery of CdtB. | 0.999 |
cdtB | cdtC | HD_0903 | HD_0904 | Cytolethal distending toxin protein B. | Cytolethal distending toxin protein C. | 0.998 |
cdtC | cdtA | HD_0904 | HD_0902 | Cytolethal distending toxin protein C. | Cytolethal distending toxin protein A; CDTs are cytotoxins which induce host cell distension, growth arrest in G2/M phase, nucleus swelling, and chromatin fragmentation in HeLa cells. CdtA, along with CdtC, probably forms a heterodimeric subunit required for the delivery of CdtB. | 0.997 |
cdtC | cdtB | HD_0904 | HD_0903 | Cytolethal distending toxin protein C. | Cytolethal distending toxin protein B. | 0.998 |